From SimBio - A generic environment for bio-numerical simulations
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Wiki
- put link or copy of the current revision history of the svn repository
- fill the page "Directory Structure"
- fill the page "Coding Standard" (naming conventions etc.)
- fill the page "File Formats"
- make a MediaWiki template for code snippets (box, fixed width font, line break)
- integrate contents from www.simbio.de
- Bug-Report system (e.g. MediaWiki Discussion Forum)
Code
- Matlab user interface design and implementation
- grid class: revise the interface and information hiding
- matrix class
- revise the information hiding and functionality,
- remove compiler dependent warnings
- [Stephan] check in PSO
- remove old, unused third-party packages
- colsam (used in 1 function call)
- libsol
- make Fortran Code compliant to Fortran95 or Fortran2003,
- Then the compilation problems disappear, because Fortran95+ is supported in gcc4.* and we don't need g77 and g2c any more.
- Update copies of outdated third-party libraries
- License tags and script to extract only the components with certain licenses
- Switch for each external library to chose between SimBio copy and locally installed version (Linux)
- Separation of the file I/O from the user interface into a separate component within the toolbox
- Revision of the SVD code, which showed to be numerically instable in some studies
- Performance optimization by reviewing code, not algorithms
- Performance optimization by reviewing selected algorithms
- Parallelization of basic operations to utilize multi-processor environments
If you are currently working on a todo, write an email to the mailing list and put your name in brackets in front of the todo, so that we don't have double developments / can join forces.